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A charge-suppressing strategy for probing protein methylation
A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches
A new chemical probe for phosphatidylinositol kinase activity
A non-canonical monovalent zinc finger stabilizes the integration of Cfp1 into the H3K4 methyltransferase complex COMPASS
Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux
Activity-based profiling of the proteasome pathway during hepatitis C virus infection
Advancements in top-down proteomics
Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus
All publications
An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis
An in vitro model maintaining taxon-specific functional activities of the gut microbiome
Analytical aspects of proteomics: 2009-2010
APols-aided protein precipitation: a rapid method for concentrating proteins for proteomic analysis
Assessing fecal metaproteomics workflow and small protein recovery using DDA and DIA PASEF mass spectrometry
Assessing the Dark Field of Metaproteome
Assessing the impact of protein extraction methods for human gut metaproteomics
Associations between Cellular Energy and Pediatric Inflammatory Bowel Disease Patient Response to Treatment
Associations Between Soluble LDLR and Lipoproteins in a White Cohort and the Effect of PCSK9 Loss-of-Function
Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes
bioinformatics
Bottom-Up Proteomics (2013-2015): Keeping up in the Era of Systems Biology
Chemoenzymatic Method for Glycoproteomic N-Glycan Type Quantitation
Clinical Microbiome Analysis by Mass Spectrometry-Based Metaproteomics
Complementary workflow for global phosphoproteome analysis
Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome
Comprehensive profiling of phosphopeptides based on anion exchange followed by flow-through enrichment with titanium dioxide (AFET)
Deep Metaproteomics Approach for the Study of Human Microbiomes
Detecting protein-protein interactions/complex components using mass spectrometry coupled techniques
Differential Lysis Approach Enables Selective Extraction of Taxon-Specific Proteins for Gut Metaproteomics
Differential proteomic analysis of synovial fluid from hip arthroplasty patients with a pseudotumor vs. Periprosthetic osteolysis
Discovery of substrates for a SET domain lysine methyltransferase predicted by multistate computational protein design
Effect of peptide-to-TiO2 beads ratio on phosphopeptide enrichment selectivity
Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis
Evaluating in Vitro Culture Medium of Gut Microbiome with Orthogonal Experimental Design and a Metaproteomics Approach
Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics
Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL(®), on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach
Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota
Fine tuning of proteomic technologies to improve biological findings: advancements in 2011-2013
first authored
Fractionation of complex protein mixture by virtual three-dimensional liquid chromatography based on combined pH and salt steps
From cells to peptides: "one-stop" integrated proteomic processing using amphipols
Grape polyphenols reduce fasting glucose and increase hyocholic acid in healthy humans: a meta-omics study
High throughput solid phase microextraction: A new alternative for analysis of cellular lipidome?
High-coverage proteome analysis reveals the first insight of protein modification systems in the pathogenic spirochete Leptospira interrogans
Identification of complex relationship between protein kinases and substrates during the cell cycle of HeLa cells by phosphoproteomic analysis
iMetaLab 1.0: a web platform for metaproteomics data analysis
iMetaLab Suite: A one-stop toolset for metaproteomics
Improved recovery and identification of membrane proteins from rat hepatic cells using a centrifugal proteomic reactor
In Vitro Metabolic Labeling of Intestinal Microbiota for Quantitative Metaproteomics
mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases
MealTime-MS: A Machine Learning-Guided Real-Time Mass Spectrometry Analysis for Protein Identification and Efficient Dynamic Exclusion
MetaLab 2.0 Enables Accurate Post-Translational Modifications Profiling in Metaproteomics
MetaLab suite
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database
MetaLab: an automated pipeline for metaproteomic data analysis
MetaPep: A core peptide database for faster human gut metaproteomics database searches
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening
Metaproteomic and Metabolomic Approaches for Characterizing the Gut Microbiome
metaproteomics
Metaproteomics reveals age-specific alterations of gut microbiome in hamsters with SARS-CoV-2 infection
Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease
Metaproteomics Reveals Growth Phase-Dependent Responses of an In Vitro Gut Microbiota to Metformin
Methylmercury can induce Parkinson's-like neurotoxicity similar to 1-methyl-4- phenylpyridinium: a genomic and proteomic analysis on MN9D dopaminergic neuron cells
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain
Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis
Multilevel Proteomic Profiling of Colorectal Adenocarcinoma Caco-2 Cell Differentiation to Characterize an Intestinal Epithelial Model
N-Glycopeptide Reduction with Exoglycosidases Enables Accurate Characterization of Site-Specific N-Glycosylation
Operational Taxon-Function Framework in MetaX: Unveiling Taxonomic and Functional Associations in Metaproteomics
pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies
Peptide abundance correlations in metaproteomics enhance taxonomic and functional analysis of the human gut microbiome
peptide centric
Peptide-Centric Approaches Provide an Alternative Perspective To Re-Examine Quantitative Proteomic Data
perspective
Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus
phosphoproteomics
PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis
Profiling Kinase Activity during Hepatitis C Virus Replication Using a Wortmannin Probe
Proteome profiling reveals regional protein alteration in cerebrum of common marmoset (Callithrix jacchus) exposed to methylmercury
Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC
Proteomic Analysis of Cerebellum in Common Marmoset Exposed to Methylmercury
Proteomic and Metaproteomic Approaches to Understand Host-Microbe Interactions
Proteomic reactors and their applications in biology
Quantitative phosphoproteomics reveals involvement of multiple signaling pathways in early phagocytosis by the retinal pigmented epithelium
Quantitative proteomic analysis of Dunaliella salina upon acute arsenate exposure
Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs
Rapid metabolic evolution in human prefrontal cortex
RapidAIM 2.0: a high-throughput assay to study functional response of human gut microbiome to xenobiotics
RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs
Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics
review
Spectral entropy as a measure of the metaproteome complexity
Staufen1 controls mitochondrial metabolism via HIF2α in embryonal rhabdomyosarcoma and promotes tumorigenesis
Structural analysis of Atopobium parvulum SufS cysteine desulfurase linked to Crohn's disease
Structural insights into an atypical histone binding mechanism by a PHD finger
Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics
TableOfContents
technology
The Landscape and Perspectives of the Human Gut Metaproteomics
The microbiologist's guide to metaproteomics
The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes
Therapeutic Targeting of Casein Kinase 1δ/ε in an Alzheimer's Disease Mouse Model
TMT
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging
tutorial
Untitled
Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn's disease
Widespread splicing changes in human brain development and aging
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